IL_4V7E_145

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCG*CGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_145 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2509

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V7E|1|Aa|G|3160
4V7E|1|Aa|C|3161
4V7E|1|Aa|C|3162
4V7E|1|Aa|G|3163
*
4V7E|1|Aa|C|3277
4V7E|1|Aa|G|3278
4V7E|1|Aa|G|3279
4V7E|1|Aa|U|3280

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L22