IL_4V7E_147

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCGC*GCGCC

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|C|3193

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_147 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2515

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7E|1|Aa|G|3186
4V7E|1|Aa|C|3187
4V7E|1|Aa|G|3188
4V7E|1|Aa|C|3189
*
4V7E|1|Aa|G|3192
4V7E|1|Aa|C|3193
4V7E|1|Aa|G|3194
4V7E|1|Aa|C|3195
4V7E|1|Aa|C|3196

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6

Chain CO

60S ribosomal protein L13