IL_4V7E_155

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|G|3361

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_155 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1428

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|U|3324
4V7E|1|Aa|G|3325
4V7E|1|Aa|U|3326
4V7E|1|Aa|A|3327
4V7E|1|Aa|A|3328
4V7E|1|Aa|G|3329
*
4V7E|1|Aa|C|3359
4V7E|1|Aa|U|3360
4V7E|1|Aa|G|3361
4V7E|1|Aa|A|3362
4V7E|1|Aa|G|3363

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CW

60S ribosomal protein L24E

Chain Cd

60S ribosomal protein L31E