IL_4V7E_158

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_158 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1672

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V7E|1|Aa|G|3337
4V7E|1|Aa|U|3338
4V7E|1|Aa|G|3339
*
4V7E|1|Aa|C|3350
4V7E|1|Aa|A|3351
4V7E|1|Aa|C|3352

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8E

Chain CR

60S ribosomal protein L19E

Chain CU

60S ribosomal protein L22E

Chain CW

60S ribosomal protein L24E