IL_4V7E_172

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

4V7E|1|Ad|C|25

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_172 not in the Motif Atlas

Homologous match to IL_4V88_384

Geometric discrepancy: 0.36

The information below is about IL_4V88_384

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V7E|1|Ad|U|24
4V7E|1|Ad|C|25
4V7E|1|Ad|A|26
*
4V7E|1|Ad|U|604
4V7E|1|Ad|A|605

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S4

Chain BX

40S ribosomal protein S12