IL_4V7E_180
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|168
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_180 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.2083
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Ad|G|141
4V7E|1|Ad|G|142
4V7E|1|Ad|A|143
4V7E|1|Ad|U|144
4V7E|1|Ad|A|145
4V7E|1|Ad|A|146
4V7E|1|Ad|C|147
*
4V7E|1|Ad|G|163
4V7E|1|Ad|C|164
4V7E|1|Ad|U|165
4V7E|1|Ad|A|166
4V7E|1|Ad|A|167
4V7E|1|Ad|U|168
4V7E|1|Ad|A|169
4V7E|1|Ad|C|170
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6
- Chain BY
- 40S ribosomal protein S24E
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