IL_4V7E_183

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCA*UCGAC

Length

8 nucleotides

Bulged bases

4V7E|1|Ad|C|263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_183 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.3758

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Ad|G|201
4V7E|1|Ad|C|202
4V7E|1|Ad|A|203
*
4V7E|1|Ad|U|262
4V7E|1|Ad|C|263
4V7E|1|Ad|G|264
4V7E|1|Ad|A|265
4V7E|1|Ad|C|266

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BI

40S ribosomal protein S8E