IL_4V7E_195

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_195 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1889

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4V7E|1|Ad|A|554
4V7E|1|Ad|G|555
4V7E|1|Ad|G|556
4V7E|1|Ad|G|557
4V7E|1|Ad|C|558
4V7E|1|Ad|A|559
4V7E|1|Ad|A|560
4V7E|1|Ad|G|561
*
4V7E|1|Ad|C|591
4V7E|1|Ad|U|592

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BD

40S ribosomal protein S3

Chain BJ

40S ribosomal protein S4

Chain Be

40S ribosomal protein S30E