IL_4V7E_203

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_203 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2369

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V7E|1|Ad|A|752
4V7E|1|Ad|C|753
*
4V7E|1|Ad|G|808
4V7E|1|Ad|G|809
4V7E|1|Ad|A|810
4V7E|1|Ad|U|811

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BH

40S ribosomal protein S7E

Chain BL

40S ribosomal protein S17

Chain BW

40S ribosomal protein S8

Chain BX

40S ribosomal protein S12