IL_4V7E_216
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CGAAGA*UCCUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_216 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3422
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V7E|1|Ad|C|995
4V7E|1|Ad|G|996
4V7E|1|Ad|A|997
4V7E|1|Ad|A|998
4V7E|1|Ad|G|999
4V7E|1|Ad|A|1000
*
4V7E|1|Ad|U|1014
4V7E|1|Ad|C|1015
4V7E|1|Ad|C|1016
4V7E|1|Ad|U|1017
4V7E|1|Ad|A|1018
4V7E|1|Ad|G|1019
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 40S ribosomal protein S11
- Chain Ba
- 40S ribosomal protein S26E
- Chain CA
- 60S ribosomal protein L2
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