IL_4V7E_217
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4V7E|1|Ad|C|1101, 4V7E|1|Ad|U|1103, 4V7E|1|Ad|G|1105
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_217 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.3462
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Ad|C|1039
4V7E|1|Ad|G|1040
4V7E|1|Ad|A|1041
*
4V7E|1|Ad|U|1100
4V7E|1|Ad|C|1101
4V7E|1|Ad|U|1102
4V7E|1|Ad|U|1103
4V7E|1|Ad|U|1104
4V7E|1|Ad|G|1105
4V7E|1|Ad|G|1106
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S5
- Chain BL
- 40S ribosomal protein S17
- Chain BW
- 40S ribosomal protein S8
- Chain BX
- 40S ribosomal protein S12
- Chain Bb
- 40S ribosomal protein S27E
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