IL_4V7E_220

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_220 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1868

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|G|1116
4V7E|1|Ad|G|1117
4V7E|1|Ad|A|1118
4V7E|1|Ad|G|1119
4V7E|1|Ad|U|1120
4V7E|1|Ad|A|1121
4V7E|1|Ad|U|1122
4V7E|1|Ad|G|1123
*
4V7E|1|Ad|U|1134
4V7E|1|Ad|G|1135
4V7E|1|Ad|A|1136
4V7E|1|Ad|A|1137
4V7E|1|Ad|A|1138
4V7E|1|Ad|C|1139

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BX

40S ribosomal protein S12

Chain Cn

60S ribosomal protein L41E