IL_4V7E_226

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_226 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.3822

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V7E|1|Ad|G|1183
4V7E|1|Ad|C|1184
*
4V7E|1|Ad|G|1464
4V7E|1|Ad|C|1465
4V7E|1|Ad|A|1466
4V7E|1|Ad|C|1467

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain BP

40S ribosomal protein S19

Chain BS

40S ribosomal protein S13

Chain BZ

40S ribosomal protein S25E