IL_4V7E_230

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_230 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.2737

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

4V7E|1|Ad|A|1238
4V7E|1|Ad|C|1239
4V7E|1|Ad|A|1240
*
4V7E|1|Ad|U|1253
4V7E|1|Ad|U|1254
4V7E|1|Ad|U|1255

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Bd

40S ribosomal protein S14

Chain Bf

40S ribosomal protein S31e