IL_4V7E_234

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V7E|1|Ad|A|1433

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_234 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1684

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V7E|1|Ad|C|1284
4V7E|1|Ad|G|1285
*
4V7E|1|Ad|C|1432
4V7E|1|Ad|A|1433
4V7E|1|Ad|G|1434

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BD

40S ribosomal protein S3

Chain BU

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S14