IL_4V7E_235

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_235 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2414

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V7E|1|Ad|U|1294
4V7E|1|Ad|G|1295
4V7E|1|Ad|G|1296
*
4V7E|1|Ad|C|1327
4V7E|1|Ad|G|1328
4V7E|1|Ad|A|1329

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein S2

Chain BC

40S ribosomal protein S5

Chain BD

40S ribosomal protein S3

Chain BR

40S ribosomal protein S17E