IL_4V7E_236

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_236 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.2784

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4V7E|1|Ad|C|1310
4V7E|1|Ad|U|1311
4V7E|1|Ad|G|1312
*
4V7E|1|Ad|C|1321
4V7E|1|Ad|G|1322

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein S2

Chain BC

40S ribosomal protein S5

Chain BR

40S ribosomal protein S17E

Chain Ba

40S ribosomal protein S26E