IL_4V7E_238

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

4V7E|1|Ad|C|1350, 4V7E|1|Ad|U|1351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_238 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1417

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|A|1349
4V7E|1|Ad|C|1350
4V7E|1|Ad|U|1351
4V7E|1|Ad|A|1352
*
4V7E|1|Ad|U|1383
4V7E|1|Ad|U|1384
4V7E|1|Ad|C|1385
4V7E|1|Ad|U|1386

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S9

Chain BU

40S ribosomal protein S10

Chain Bg

RACK1