IL_4V7E_239

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCUAU*GCUAGC

Length

11 nucleotides

Bulged bases

4V7E|1|Ad|G|1381

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_239 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3308

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V7E|1|Ad|G|1353
4V7E|1|Ad|C|1354
4V7E|1|Ad|U|1355
4V7E|1|Ad|A|1356
4V7E|1|Ad|U|1357
*
4V7E|1|Ad|G|1377
4V7E|1|Ad|C|1378
4V7E|1|Ad|U|1379
4V7E|1|Ad|A|1380
4V7E|1|Ad|G|1381
4V7E|1|Ad|C|1382

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S9

Chain BU

40S ribosomal protein S10

Chain Bg

RACK1