IL_4V7E_244

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_244 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.1521

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4V7E|1|Ad|U|1504
4V7E|1|Ad|U|1505
4V7E|1|Ad|G|1506
*
4V7E|1|Ad|C|1517
4V7E|1|Ad|C|1518
4V7E|1|Ad|G|1519

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BT

40S ribosomal protein S19E