IL_4V7E_245

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_245 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1709

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Ad|G|1548
4V7E|1|Ad|G|1549
4V7E|1|Ad|G|1550
4V7E|1|Ad|A|1551
4V7E|1|Ad|U|1552
4V7E|1|Ad|A|1553
*
4V7E|1|Ad|U|1574
4V7E|1|Ad|U|1575
4V7E|1|Ad|C|1576
4V7E|1|Ad|A|1577
4V7E|1|Ad|A|1578
4V7E|1|Ad|C|1579

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BS

40S ribosomal protein S13

Chain BT

40S ribosomal protein S19E

Chain BZ

40S ribosomal protein S25E