IL_4V7E_246

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V7E|1|Ad|C|1645, 4V7E|1|Ad|A|1776

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_246 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1857

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V7E|1|Ad|C|1644
4V7E|1|Ad|C|1645
4V7E|1|Ad|G|1646
*
4V7E|1|Ad|C|1774
4V7E|1|Ad|A|1775
4V7E|1|Ad|A|1776
4V7E|1|Ad|G|1777

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain Af

5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'

Chain Ba

40S ribosomal protein S26E