IL_4V7E_251

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_251 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.2003

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V7E|1|Ad|C|1661
4V7E|1|Ad|G|1662
4V7E|1|Ad|A|1663
4V7E|1|Ad|U|1664
*
4V7E|1|Ad|A|1754
4V7E|1|Ad|G|1755
4V7E|1|Ad|A|1756
4V7E|1|Ad|G|1757

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain CV

60S ribosomal protein L14

Chain Cn

60S ribosomal protein L41E