IL_4V7E_252

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

4V7E|1|Ad|U|1665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_252 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.5518

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V7E|1|Ad|U|1664
4V7E|1|Ad|U|1665
4V7E|1|Ad|G|1666
*
4V7E|1|Ad|U|1753
4V7E|1|Ad|A|1754

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BX

40S ribosomal protein S12

Chain CV

60S ribosomal protein L14