IL_4V7E_254

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGAAGU*AUUGAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_254 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3849

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|U|1677
4V7E|1|Ad|G|1678
4V7E|1|Ad|A|1679
4V7E|1|Ad|A|1680
4V7E|1|Ad|G|1681
4V7E|1|Ad|U|1682
*
4V7E|1|Ad|A|1737
4V7E|1|Ad|U|1738
4V7E|1|Ad|U|1739
4V7E|1|Ad|G|1740
4V7E|1|Ad|A|1741
4V7E|1|Ad|A|1742

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BG

40S ribosomal protein S6

Chain CW

60S ribosomal protein L24E