IL_4V7E_256

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_256 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.2047

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Ad|C|1686
4V7E|1|Ad|G|1687
4V7E|1|Ad|G|1688
4V7E|1|Ad|A|1689
4V7E|1|Ad|U|1690
*
4V7E|1|Ad|A|1729
4V7E|1|Ad|G|1730
4V7E|1|Ad|A|1731
4V7E|1|Ad|A|1732
4V7E|1|Ad|G|1733

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain CW

60S ribosomal protein L24E