IL_4V7E_271

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAUU*GGGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_271 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3628

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V7E|1|Aa|G|1988
4V7E|1|Aa|G|1989
4V7E|1|Aa|A|1990
4V7E|1|Aa|U|1991
4V7E|1|Aa|U|1992
*
4V7E|1|Aa|G|2019
4V7E|1|Aa|G|2020
4V7E|1|Aa|G|2021
4V7E|1|Aa|U|2022
4V7E|1|Aa|C|2023

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains