IL_4V7E_289
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GCAAGGAUUG*CUUGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 4V7E|1|Ad|G|1232
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_289 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3007
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7E|1|Ad|G|1228
4V7E|1|Ad|C|1229
4V7E|1|Ad|A|1230
4V7E|1|Ad|A|1231
4V7E|1|Ad|G|1232
4V7E|1|Ad|G|1233
4V7E|1|Ad|A|1234
4V7E|1|Ad|U|1235
4V7E|1|Ad|U|1236
4V7E|1|Ad|G|1237
*
4V7E|1|Ad|C|1256
4V7E|1|Ad|U|1257
4V7E|1|Ad|U|1258
4V7E|1|Ad|G|1259
4V7E|1|Ad|A|1260
4V7E|1|Ad|U|1261
4V7E|1|Ad|U|1262
4V7E|1|Ad|C|1263
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10E
- Chain BM
- 40S ribosomal protein S12E
- Chain Bd
- 40S ribosomal protein S14
- Chain Bf
- 40S ribosomal protein S31e
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