IL_4V7E_299
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UUAAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1225
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_299 not in the Motif Atlas
- Homologous match to IL_8P9A_282
- Geometric discrepancy: 0.2176
- The information below is about IL_8P9A_282
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V7E|1|Aa|U|1222
4V7E|1|Aa|U|1223
4V7E|1|Aa|A|1224
4V7E|1|Aa|A|1225
4V7E|1|Aa|G|1226
4V7E|1|Aa|A|1227
4V7E|1|Aa|C|1228
4V7E|1|Aa|A|1229
4V7E|1|Aa|G|1230
*
4V7E|1|Aa|C|1287
4V7E|1|Aa|C|1288
4V7E|1|Aa|G|1289
4V7E|1|Aa|A|1290
4V7E|1|Aa|A|1291
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CS
- 60S ribosomal protein L20
- Chain Cm
- 60S ribosomal protein L40E
- Chain Cq
- 60S acidic ribosomal protein P0
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