IL_4V7I_003

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_003 not in the Motif Atlas

Homologous match to IL_8P9A_366

Geometric discrepancy: 0.5621

The information below is about IL_8P9A_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V7I|1|A7|C|30
4V7I|1|A7|C|31
*
4V7I|1|A7|G|51
4V7I|1|A7|A|52
4V7I|1|A7|A|53
4V7I|1|A7|G|54

Current chains

Chain A7

5S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5

Chain AO

50S ribosomal protein L18