3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
UUAAC*GGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_019 not in the Motif Atlas
Homologous match to IL_5J7L_258
Geometric discrepancy: 0.2986
The information below is about IL_5J7L_258
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V7I|1|A8|U|606
4V7I|1|A8|U|607
4V7I|1|A8|A|608
4V7I|1|A8|A|609
4V7I|1|A8|C|610
*
4V7I|1|A8|G|618
4V7I|1|A8|G|619
4V7I|1|A8|G|620
4V7I|1|A8|A|621
4V7I|1|A8|G|622

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AE
50S ribosomal protein L4
Chain AL
50S ribosomal protein L15

Coloring options:


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