3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
4V7I|1|A8|G|776, 4V7I|1|A8|A|788, 4V7I|1|A8|A|789, 4V7I|1|A8|U|790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_026 not in the Motif Atlas
Homologous match to IL_5J7L_265
Geometric discrepancy: 0.184
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

4V7I|1|A8|G|775
4V7I|1|A8|G|776
4V7I|1|A8|G|777
*
4V7I|1|A8|C|787
4V7I|1|A8|A|788
4V7I|1|A8|A|789
4V7I|1|A8|U|790
4V7I|1|A8|C|791

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A2
50S ribosomal protein L34
Chain A6
50S ribosomal protein L2
Chain AS
50S ribosomal protein L22

Coloring options:


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