IL_4V7I_032

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_032 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.3146

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V7I|1|A8|G|864
4V7I|1|A8|C|865
4V7I|1|A8|A|866
4V7I|1|A8|C|867
4V7I|1|A8|U|868
*
4V7I|1|A8|A|909
4V7I|1|A8|A|910
4V7I|1|A8|A|911
4V7I|1|A8|C|912

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain AM

50S ribosomal protein L16

Chain AW

50S ribosomal protein L27