3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
4V7I|1|A8|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_048 not in the Motif Atlas
Homologous match to IL_5J7L_286
Geometric discrepancy: 0.2213
The information below is about IL_5J7L_286
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

4V7I|1|A8|C|1196
4V7I|1|A8|G|1197
4V7I|1|A8|U|1198
*
4V7I|1|A8|A|1247
4V7I|1|A8|G|1248
4V7I|1|A8|U|1249
4V7I|1|A8|G|1250

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AE
50S ribosomal protein L4
Chain AL
50S ribosomal protein L15
Chain AQ
50S ribosomal protein L20

Coloring options:


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