IL_4V7I_050

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V7I|1|A8|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_050 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2453

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V7I|1|A8|C|1208
4V7I|1|A8|U|1209
4V7I|1|A8|G|1210
4V7I|1|A8|C|1211
4V7I|1|A8|G|1212
4V7I|1|A8|A|1213
4V7I|1|A8|A|1214
4V7I|1|A8|G|1215
*
4V7I|1|A8|U|1234
4V7I|1|A8|G|1235
4V7I|1|A8|G|1236
4V7I|1|A8|A|1237
4V7I|1|A8|G|1238

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L20