IL_4V7I_054

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V7I|1|A8|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_054 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1936

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V7I|1|A8|C|1319
4V7I|1|A8|C|1320
4V7I|1|A8|A|1321
4V7I|1|A8|A|1322
4V7I|1|A8|C|1323
*
4V7I|1|A8|G|1331
4V7I|1|A8|G|1332
4V7I|1|A8|G|1333

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AA

PREPROTEIN TRANSLOCASE SECY SUBUNIT

Chain AS

50S ribosomal protein L22

Chain AT

50S ribosomal protein L23