IL_4V7I_088

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UUG*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_088 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2863

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7I|1|A8|U|2098
4V7I|1|A8|U|2099
4V7I|1|A8|G|2100
*
4V7I|1|A8|U|2189
4V7I|1|A8|G|2190
4V7I|1|A8|A|2191

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L9