IL_4V7I_131

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V7I|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_131 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2317

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|G|147
4V7I|1|BA|G|148
4V7I|1|BA|A|149
4V7I|1|BA|U|150
4V7I|1|BA|A|151
4V7I|1|BA|A|152
4V7I|1|BA|C|153
*
4V7I|1|BA|G|168
4V7I|1|BA|C|169
4V7I|1|BA|U|170
4V7I|1|BA|A|171
4V7I|1|BA|A|172
4V7I|1|BA|U|173
4V7I|1|BA|A|174
4V7I|1|BA|C|175

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20