IL_4V7I_133

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V7I|1|BA|U|244, 4V7I|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_133 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.3049

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V7I|1|BA|G|242
4V7I|1|BA|A|243
4V7I|1|BA|U|244
4V7I|1|BA|U|245
4V7I|1|BA|A|246
4V7I|1|BA|G|247
*
4V7I|1|BA|C|277
4V7I|1|BA|G|278
4V7I|1|BA|A|279
4V7I|1|BA|C|280
4V7I|1|BA|G|281
4V7I|1|BA|A|282
4V7I|1|BA|U|283
4V7I|1|BA|C|284

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17