IL_4V7I_157

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_157 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2054

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7I|1|BA|A|831
4V7I|1|BA|G|832
4V7I|1|BA|G|833
*
4V7I|1|BA|C|853
4V7I|1|BA|U|854
4V7I|1|BA|U|855

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BR

30S ribosomal protein S18

Chain BU

30S ribosomal protein S21