3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CUU*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_170 not in the Motif Atlas
Geometric match to IL_1L9A_003
Geometric discrepancy: 0.2221
The information below is about IL_1L9A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70707.3
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
70

Unit IDs

4V7I|1|BA|C|1114
4V7I|1|BA|U|1115
4V7I|1|BA|U|1116
*
4V7I|1|BA|G|1184
4V7I|1|BA|G|1185
4V7I|1|BA|G|1186

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BC
30S ribosomal protein S3
Chain BI
30S ribosomal protein S9
Chain BJ
30S ribosomal protein S10
Chain BN
30S ribosomal protein S14

Coloring options:


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