IL_4V7I_181

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V7I|1|BA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_181 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.1979

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V7I|1|BA|C|1407
4V7I|1|BA|A|1408
4V7I|1|BA|C|1409
*
4V7I|1|BA|G|1491
4V7I|1|BA|A|1492
4V7I|1|BA|A|1493
4V7I|1|BA|G|1494

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A8

Large subunit ribosomal RNA; LSU rRNA

Chain BL

30S ribosomal protein S12