3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_197 not in the Motif Atlas
Homologous match to IL_6CZR_359
Geometric discrepancy: 0.4559
The information below is about IL_6CZR_359
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.2
Basepair signature
cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4V7I|1|BA|U|409
4V7I|1|BA|G|410
4V7I|1|BA|A|411
4V7I|1|BA|A|412
4V7I|1|BA|G|413
4V7I|1|BA|A|414
4V7I|1|BA|A|415
4V7I|1|BA|G|416
*
4V7I|1|BA|U|427
4V7I|1|BA|G|428
4V7I|1|BA|U|429
4V7I|1|BA|A|430
4V7I|1|BA|A|431
4V7I|1|BA|A|432
4V7I|1|BA|G|433

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BD
30S ribosomal protein S4

Coloring options:


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