IL_4V7I_197

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_197 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.4559

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|U|409
4V7I|1|BA|G|410
4V7I|1|BA|A|411
4V7I|1|BA|A|412
4V7I|1|BA|G|413
4V7I|1|BA|A|414
4V7I|1|BA|A|415
4V7I|1|BA|G|416
*
4V7I|1|BA|U|427
4V7I|1|BA|G|428
4V7I|1|BA|U|429
4V7I|1|BA|A|430
4V7I|1|BA|A|431
4V7I|1|BA|A|432
4V7I|1|BA|G|433

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4