IL_4V7I_199

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

4V7I|1|BA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_199 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.3481

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V7I|1|BA|G|933
4V7I|1|BA|C|934
4V7I|1|BA|A|935
4V7I|1|BA|C|936
*
4V7I|1|BA|G|1379
4V7I|1|BA|U|1380
4V7I|1|BA|U|1381
4V7I|1|BA|C|1382
4V7I|1|BA|C|1383
4V7I|1|BA|C|1384

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9