IL_4V7J_127

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V7J|1|Aa|G|129|||A, 4V7J|1|Aa|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_127 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.0965

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V7J|1|Aa|U|129
4V7J|1|Aa|G|129|||A
4V7J|1|Aa|A|130
4V7J|1|Aa|C|131
*
4V7J|1|Aa|G|231
4V7J|1|Aa|G|232

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17

Chain At

30S ribosomal protein S20