IL_4V7J_131

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V7J|1|Aa|U|244, 4V7J|1|Aa|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_131 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0727

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V7J|1|Aa|C|242
4V7J|1|Aa|A|243
4V7J|1|Aa|U|244
4V7J|1|Aa|C|245
4V7J|1|Aa|A|246
4V7J|1|Aa|G|247
*
4V7J|1|Aa|C|277
4V7J|1|Aa|G|278
4V7J|1|Aa|A|279
4V7J|1|Aa|C|280
4V7J|1|Aa|G|281
4V7J|1|Aa|A|282
4V7J|1|Aa|C|283
4V7J|1|Aa|G|284

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S17