IL_4V7J_143
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_143 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.0891
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V7J|1|Aa|U|580
4V7J|1|Aa|G|581
4V7J|1|Aa|U|582
4V7J|1|Aa|A|583
4V7J|1|Aa|G|584
*
4V7J|1|Aa|U|757
4V7J|1|Aa|G|758
4V7J|1|Aa|A|759
4V7J|1|Aa|G|760
4V7J|1|Aa|G|761
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 30S ribosomal protein S8
- Chain Al
- 30S ribosomal protein S12
- Chain Ao
- 30S ribosomal protein S15
- Chain Aq
- 30S ribosomal protein S17
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