IL_4V7J_173

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V7J|1|Aa|C|1400, 4V7J|1|Aa|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_173 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.094

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V7J|1|Aa|C|1399
4V7J|1|Aa|C|1400
4V7J|1|Aa|G|1401
*
4V7J|1|Aa|C|1501
4V7J|1|Aa|A|1502
4V7J|1|Aa|A|1503
4V7J|1|Aa|G|1504

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Av

Transfer RNA; tRNA

Chain Ax

RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')