IL_4V7J_256

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_256 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1059

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V7J|1|BA|G|1856
4V7J|1|BA|G|1857
4V7J|1|BA|G|1858
4V7J|1|BA|A|1859
4V7J|1|BA|G|1860
*
4V7J|1|BA|C|1882
4V7J|1|BA|G|1883
4V7J|1|BA|A|1884
4V7J|1|BA|A|1885
4V7J|1|BA|C|1886

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BC

50S ribosomal protein L1

Chain Bw

Transfer RNA; tRNA