IL_4V7J_328
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_328 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.179
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V7J|1|Ba|U|605
4V7J|1|Ba|G|606
4V7J|1|Ba|A|607
4V7J|1|Ba|A|608
4V7J|1|Ba|A|609
4V7J|1|Ba|G|610
4V7J|1|Ba|A|611
4V7J|1|Ba|C|612
*
4V7J|1|Ba|G|628
4V7J|1|Ba|G|629
4V7J|1|Ba|G|630
4V7J|1|Ba|G|631
4V7J|1|Ba|A|632
4V7J|1|Ba|G|633
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain Bd
- 30S ribosomal protein S4
- Chain Bh
- 30S ribosomal protein S8
- Chain Bp
- 30S ribosomal protein S16
- Chain Bq
- 30S ribosomal protein S17
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